#h3k4me1 GC

"wt_h3k4me1.mm10.sorted.rmdup.bw"

#H3k27ac sudhl4 rdf lab

"N5-8-IP-H3K27AC-10_SL017_hg19.fixmate.sorted.markdup.unique.merged.bam.bw"

#foxo merged samples

"m1l39_foxo_starve_merge.bw"

"m1l47_foxo_starve_merge.bw"

"1wt_foxo_starve_merged.bw"

#ino80 rep2 mychff

"ino80_mychff_0719.hg19.rmdup.bw

#ruvbl1 dsg chip mychff rep2

"ruvbl1_dsg_mychff_0719.hg19.rmdup.bw"

#myc in mychff chip rep2

"myc_mychff_0719.hg19.rmdup.bw"

#foxo gc mouse chip spring 2019

"foxo1_gc_0719.mm10.rmdup.bw"

#H3K27ac control chip ex vivo stimulated b cells lps il4

"dds_gv_4_foxo_ctr_chip_mm_S6_L001_R1_001_DS002.mm10.sorted.100.bw"

#H3K27ac from ex vivo naive B cells

"dds_mr_foxo_naive_mm_chipseq_S8_L001_R1_001.mm10.sorted.rmdup.bin100.bw"

#wt merged peaks homer 50 bp

"homerResultswt.html"

"WT_FOXO_1118.rmdup.bw"

"M1L47_FOXO_1118.rmdup.bw"

"M1L39_FOXO_1118.rmdup.bw"

"WT_FOXO_SUDHL4_STARVE_1018.rmdup.bw"

"WT_FOXO_1018_macs_p05.bed"

M1L39_FOXO_SUDHL4_STARVE_1018.rmdup.bw"

M1L47_FOXO_SUDHL4_STARVE_1018.rmdup.bw"

# new ino80 bw made by me

ino80_mychff.sorted.rmdup.bin10.rpgf.bw

ino80_mychff.sorted.rmdup.bin10.fpkm.bw

ruvbl1_DSG_mychff.sorted.rmdup.bin10.fpkm.bw

ruvbl1_DSG_mychff.sorted.rmdup.bin10.rpgf.bw

#new myc_hff bw made my me

myc_mychff.sorted.rmdup.bin10.fpkm.bw

myc_mychff.sorted.rmdup.bin10.rpgf.bw

#homer on ino80 promoter peaks

ino80promoters.homer.knownResults.html

#m1l47 chipmentation full media

m1l47_foxochipmentation_082018.hg19.rmdup.bw

#foxo chip iGB

iGB_foxo1_xlinkchip_082018.mm10.rmdup.bw

#m1l47 rna-seq foxo sudhl4

m1l47_rnaseq_accepted_hits.bw

#wt rna-seq foxo sudhl4

WT_p2_accepted_hits_foxostarvernaseq.sorted.bw

#sudhl4 wt starve 3 hours rep 1

wt_foxo1chip_sudhl4_starve_0318.hg19.sorted.rmdup.bw

#same as below but with duplicates included

wt_foxo1chip_sudhl4starve_0718.hg19.sorted.bw

#sudhl4 wt starve 3 hours

wt_foxo1chip_sudhl4starve_0718.hg19.sorted.rmdup.bw

#same as below but with duplicates included

m1l47_foxo1chip_sudhl4starve_0718.hg19.sorted.bw

#sudhl4 m1l47 starve 3 hours

m1l47_foxo1chip_sudhl4starve_0718.hg19.sorted.rmdup.bw

#sudhl4 m1l47 starve 3 hours rep 1

m1l47_foxochip_starve_sudhl4_0518.hg19.sorted.rmdup.bw

#sudhl4 wt input chip-seq starve 3 hours

wt_input_sudhl4starve_0718.hg19.sorted.rmdup.bw

#foxo1 a166v20 sudhl4 chip-seq starve 3 hours

a166v20_foxo1chip_sudhl4starve_0718.hg19.sorted.rmdup.bw

#foxo1 xlink chip-seq m1l39 starved 3 hours

m1l39_foxochip_starve_sudhl4_0518.hg19.rmdup.bw

m1l47_foxochip_starve_sudhl4_0518.hg19.rmdup.bw

#peak calling

wt_sudhl4_foxostarvechip_p5.bed

m1l47_sudhl4_foxochip_starve_p5.bed

#foxo1 sudhl4 wt starved crosslink chipseq

foxochip_wtsudhl4_starved.hg19.sorted.rmdup.bw

h2az_relative_mycpromoter_mychff_5kb.matrix.pdf

#Rosa native chip samples #input

input_controlhff_native_hg19.sorted.rmdup.bw

#h2ax

mychff_h2ax.hg19.sorted.rmdup.bw

mychff_sh494_h2ax.hg19.sorted.rmdup.bw

controlhff_h2ax.hg19.sorted.rmdup.bw

mychff_sh831_h2ax.hg19.sorted.rmdup.bw

#h2az

mychff_sh494_h2az.hg19.sorted.rmdup.bw

controlhff_h2az.hg19.sorted.rmdup.bw

mychff_sh831_h2az.hg19.sorted.rmdup.bw

mychff_h2az.hg19.sorted.rmdup.bw

knownResults.html

homerResults.html

Foxo1_atac_WT1_H3K4me1peaks_1kb.matrix.pdf

#ATAC_iGB

iGB1_omni_ATAC_1117.bigwig

igb1_fast_ATAC_1117.bigwig

igb2_fast_ATAC_1117.bigwig

#ATAC foxo new

KO2_FoxO1_ATAC_25k_1117.mm10.dedup.filter-LTE_100.norm-RPM.bigwig

#ATAC Rosa

mychff_sh494_atac.bigwig

Mychff_shControl_atac.bigwig

Controlhff_shcontrol_atac.bigwig

mychff_sh831_atac.bigwig

#ruvbl1_rb_DSG_mychff_sept2017

ruvbl1_rb_mychff_DS023.hg19.sorted.rmdup.bin100.bw

#WT GC foxo1 xlink chip august 2017

foxo1_xlink_august_S10_L001_R1_001.fastq.mm10.sorted.rmdup.bw

#ko foxo mouse GC h3k27ac august 2017

foxo1_ko_h3k27ac_0817_S14_L001_R1_001.fastq.mm10.sorted.rmdup.bw

#ko foxo mouse GC h3k27ac aug 2017 called peaks

foxo1_ko_h3k27ac_0817_peaks_p5.bed

dds_mr_wth3k27ac_mm_chipseq_S2_L001_R1_001.mm10.sorted.rmdup.bam

dds_mr_wth3k27ac_mm_chipseq_S2_L001_R1_001.mm10.sorted.rmdup.bam.bai

dds_mr_foxo_naive_mm_chipseq_S8_L001_R1_001.mm10.sorted.rmdup.bin100.bw

dds_mr_koh3k27ac_mm_chipseq_S5_L001_R1_001.mm10.sorted.rmdup.bw

dds_mr_wth3k4me1_mm_chipseq_S3_L001_R1_001.mm10.sorted.rmdup.bw

KO_H3K4me1_TF_targets__vs__p15_md100.bed

WT_H3K4me1_TF_targets__vs__p15_md100.bed

dds_gv_4_foxo_ctr_chip_mm_S6_L001_R1_001_DS002.mm10.sorted.100.bw

ds_mr_foxocre_mm_chipseq_S1_L001_R1_001_DS003.mm10.sorted.rmdup.bw

dds_mr_foxo_chip_hs_chipseq_S11_L001_R1_001.mm10.sorted.rmdup.bw

#input_foxo_binding_chip

dds_mr_input_foxo_hs_chipseq_S10_L001_R1_001.mm10.sorted.rmdup.bw

#foxo_binding_chip_withduplicates

dds_mr_foxo_chip_hs_chipseq_S11_L001_R1_001.mm10.sorted.bw

#myc_hff_myc_basepairio_analysis

MYC_HFF_cMYC.hg19.dedup.norm-1M.bw

#ruvbl1_rb_basepairio_analysis

ruvbl1_rb.hg19.dedup.norm-1M.bigwig

#ruvbl1_ms_basepairio

ruvbl1_ms.hg19.dedup.norm-1M.bigwig

#INO80_mychff_basepairanalysis

INO80.hg19.dedup.norm-1M.bigwig

#origin_of_rep_chip_seq_zhe_ji

GSM1717888_Orc2_K562_rep1.bw

#FoxO Jan ChIP seq KO input

dds_mr_koinput_mm_chipseq_S4_L001_R1_001.mm10.sorted.rmdup.bw

#FoxO1 June 2017 ATAC seq WT1 25k cells 2x enzyme basepair io analysis alignment mm10

WT1_FoxO1_25k_ATAC.mm10.dedup.filter-LTE_100.norm-1M.bigwig

#FoxO1 June 2017 ATAC seq KO1 25k GC sorted cells 2x enzyme basepair io analysis alignment mm10

KO1_FoxO1_ATAC_25k.mm10.dedup.filter-LTE_100.norm-1M.bigwig

#FoxO1 June 2017 ATAC seq KO2 25k GC sorted cells 2x enzyme basepair io analysis alignment mm10

KO2_FoxO1_ATAC_25k.mm10.dedup.filter-LTE_100.norm-1M.bigwig

#FoxO1 june 2017 ATAC seq WT2 25k GC sorted cells 2x enzyme basepair io analysis alignment mm10

WT2_FoxO1_ATAC_25k.mm10.dedup.filter-LTE_100.norm-1M.bigwig

#MYC_MYC_HFF_ANTONY_ANALYSIS

HFF_myc_myc_DS011.hg19.sorted.rmdup.bin100.bw

#MYC_CTRL_HFF_ANTONY_ANALYSIS

HFF_myc_ctrl_DS003.hg19.sorted.rmdup.bin100.bw

#Ruvbl1_ms_CTRL_HFF_ANTONY_ANALYSIS

HFF_ruvbl1_ms_ctrl_DS005.hg19.sorted.rmdup.bin100.bw

#ruvbl1_ms_MYC_HFF_ANTONY_ANALYSIS

HFF_ruvbl1_ms_myc_DS009.hg19.sorted.rmdup.bin100.bw

#pol2_MYC_HFF_ANTONY_ANALYSIS

HFF_pol2_myc_DS012.hg19.sorted.rmdup.bin100.bw

#pol2_ctrl_HFF_ANTONY_ANALYSIS

HFF_pol2_ctrl_DS004.hg19.sorted.rmdup.bin100.bw

#ino80_ctrl_HFF_ANTONY_ANALYSIS

HFF_Ino80_ctrl_DS001.hg19.sorted.rmdup.bin100.bw

#ino80_myc_HFF_ANTONY_ANALYSIS

HFF_ino80_myc_DS007.hg19.sorted.rmdup.bin100.bw

#ruvbl1_rb_ctrl_HFF_ANTONY_ANALYSIS

HFF_ruvbl1_rb_ctrl_DS006.hg19.sorted.rmdup.bin100.bw

#ruvbl1_rb_myc_HFF_ANTONY_ANALYSIS

HFF_ruvbl1_rb_myc_DS010.hg19.sorted.rmdup.bin100.bw

HFF_Input_ctrl_DS002.hg19.sorted.rmdup.bin100.bw

DS008

#H3K27ac in WT sorted GC

WT_H3K27ac_may2017

dds_mr_wth3k27ac_mm_chipseq_S2_L001_R1_001.mm10.sorted.rmdup.bw